Each plot shows the 1000 most significant SNPs in the GWAS for that sample set. At the top, the P value for each SNP is shown, colour-coded by chromosome. Underneath is a heatmap showing the pairwise correlation between all 1000 SNPs, helping to see groups of SNPs that are in linkage disequilibrium. Each point in the P-value plot is lined up with its column in the heatmap. Beneath the column, lines heatmap columns to a map of the genome to show the genomic position of each SNP. Black horizontal bars between the heatmap and the linking lines indicate genomic regions containing a high density of these top 1000 SNPs (100 kb windows that contained at least 10 SNPs).
Avrankou_coluzzii_Delta
Baguida_gambiae_Delta
Korle-Bu_coluzzii_Delta
Madina_gambiae_Delta
Obuasi_gambiae_Delta
Baguida_gambiae_PM
Korle-Bu_coluzzii_PM
Madina_gambiae_PM
Obuasi_gambiae_PM
